PATHOGEN GENOMICS APP

FROM GENOME TO ACTION

The PATHOGEN GENOMICS APP is a powerful new tool for pathogen investigations, providing Whole Genome Sequencing identification and clustering to streamline analysis. Genomics are changing the way food manufacturers manage quality control issues, leading to an efficient use of their budget and significant savings on non-quality cost.

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Overview
Resources

The Future of Sequencing

The PATHOGEN GENOMICS APP allows you to compare new strains with historical contamination data while screening for key pathogens such as Salmonella, Listeria spp. (including L. monocytogenes), Cronobacter, Pathogenic E. coli (coming soon), Pseudomonas aeruginosa (coming soon), and Campylobacter (coming soon).

With PATHOGEN GENOMICS APP you get:

Direct insights from sequencing data
Conduct investigations with your full history of contaminations
Expert support for interpretation and analysis

The PATHOGEN GENOMICS APP is hosted on the AUGMENTED-DX PORTAL. The AUGMENTED-DX Portal is a centralized interface with access to all your test results allowing to simplify your workflows and enhance decision-making.

All client data are handled under strict confidentiality and secure data management protocols. Clients retain full and exclusive ownership of their data at all times. Under no circumstances is client data shared between clients or integrated into AUGMENTED-DX databases.

Whole Genome Sequencing made accessible with the PATHOGEN GENOMICS APP!

BENEFITS - WHY USING AUGMENTED-DX PORTAL & GENOMICS?

AUGMENTED-DX PORTAL & GENOMICS - Complex Whole Genome Sequencing made accessible.

Automatic creation of WGS clusters closely related or identical strains.
Creation of phylogenetic trees to identify how strains evolved and mutated over time.
Manage autonomously your Sequencing data.
Store all your investigation sequencing data history.
Request expert support for a better understanding of your contaminations’ behaviors

Looking for more insights & autonomy?

Our bioinformatics team is here to help you in your investigations,

bringing their unique expertise to your challenges:

Data import and interpretation
Strain resistance mechanism (biocide, thermal treatment, etc.)

Brochure

PATHOGEN GENOMICS APP - From Genome to Action

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Continue Your Journey

SCIENTIFIC ARTICLE

Whole Genome Sequencing (WGS) and Metagenomics

All of the information required for a living being to grow, reproduce, and mature is encoded in sequences of 4 building blocks called nucleotides commonly abbreviated as C, G, A, and T) polymerized into long chains contained within cells called deoxyribonucleic acid (DNA).

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VIDEO TESTIMONIAL

Partnership Between Laïta & bioMérieux

The aim: to detect, monitor and investigate at every step of the infant formula production process in order to minimize the risk of contamination.

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CASE STUDY

Augmented Diagnostics with Pathogen Mapping for better understanding of Listeria monocytogenes contaminations in the salmon production.

A ready-to-eat salmon producer was recurrently encountering Listeria monocytogenes. Listeria monocytogenes is a common contaminant in salmon. Testing for this contaminant is especially crucial for smoked salmon as it is a ready-to-eat food. bioMérieux performed Pathogen Mapping, a Whole Genome Sequencing solution (WGS) for strain typing and better understanding of pathogen contaminations

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WEBINAR

Root Cause Analysis, A new era thanks to Genomics

Following EFSA scientific opinion publication on the “Persistence of microbiological hazards in food & feed production and processing environment”, we sat together with scientific experts from bioMérieux and Kersia to understand the implication of this publication on the daily work of the food industry and how we can assist you in going beyond this scientific opinion.

WATCH REPLAY

AUGMENTED-DX PORTAL - The Investigation Hub of Tomorrow

AUGMENTED-DX brings cutting-edge genomics, data science, and bioinformatics to your fingertips. Designed for non-experts, this platform ensures that advanced tools are accessible and easy to understand for all users.

The AUGMENTED-DX Portal provides a centralized interface to access and organize all your test results allowing to simplify your workflows and enhance decision-making.

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GENE-UP^® TYPER

Move from test results to actionable insights and make impactful decisions within 2 hours from an isolated colony with GENE UP® TYPER. This real-time PCR assay utilizes probabilistic typing of specific microorganisms to help identify the root cause of contamination and avoid future recurrence.

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root cause analysis biomerieux food industry

Root Cause Analysis in the Food Industry

We deliver microbial root‑cause analysis through Whole Genome Sequencing and pathogen mapping, helping producers quickly identify contamination sources and strengthen their food‑safety programs.