R&D publications in Sequencing field

Metagenomic Next-Generation Sequencing Reveals Individual Composition and Dynamics of Anelloviruses during Autologous Stem Cell Transplant Recipient Management
Bal A., Sarkozy C., Josset L., Cheynet V., Oriol G., Becker J., Vilchez G., Sesques P., Mallet F., Pachot A., Morfin F., Lina B., Salles G., Reynier F., Trouillet-Assant S. and Brengel-Pesce K.
Viruses 2018


Routine Whole-Genome Sequencing for Outbreak Investigations of Staphylococcus aureus in a National Reference Center
Durand G., Javerliat F., Bes M., Veyrieras J.B., Guigon G., Mugnier N., Schicklin S., Kaneko G., Santiago-Allexant E., Bouchiat C., Martins-Simoes P., Laurent F., Van Belkum A., Vandenesch F. and Tristan A.
Front Microbiol 2018


A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events
Jaillard M., Lima L., Tournoud M., Mahe P., Van Belkum A., Lacroix V. and Jacob L.
PLoS Genet 2018 


Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection
Mahe P. and Tournoud M.
BMC Bioinformatics 2018


Laboratory-Based and Point-of-Care Testing for MSSA/MRSA Detection in the Age of Whole Genome Sequencing
Van Belkum A. and Rochas O.
Front Microbiol 2018


MetaVW: Large-Scale Machine Learning for Metagenomics Sequence Classification
Vervier K., Mahe P. and Vert J.P.
Methods Mol Biol 2018



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